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| Spider species richness in cocoa agroforestry systems, comparing vertical strata, local management and distance to forest | | Agriculture, ecosystems and environment |
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| Spatial lumping of a distributed rainfall‐sediment‐runoff model and its effective lumping scale | | Hydrological processes |
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| DNA sequence incongruence and inconsistent morphology obscure species boundaries in the Teratosphaeria suttonii species complex | | Mycoscience |
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| Realized genetic gains observed in second generation seedling seed orchards of Eucalyptus pellita in Indonesia | | Journal of forest research |
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| Rice in cropping systems—Modelling transitions between flooded and non-flooded soil environments | | European journal of agronomy |
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| Goat-based aid programme in Central Java: An effective intervention for the poor and vulnerable? | | Small ruminant research |
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| Candida theae sp. nov., a new anamorphic beverage-associated member of the Lodderomyces clade | | International journal of food microbiology |
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| Retention of volatile components of durian fruit leather during processing and storage | | Journal of food processing and preservation |
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| Cost-effectiveness of plant and animal biodiversity indicators in tropical forest and agroforest habitats | | Journal of applied ecology |
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| Late quaternary turnover of mammals in Borneo: the zooarchaeological record | | Biodiversity and conservation |
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| Climate change hotspots in the CMIP5 global climate model ensemble | | Climatic change |
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| Land and water management of tidal lowlands: Experiences in Telang and Saleh, South Sumatra | | Irrigation and drainage |
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| Isolation, via 454 sequencing, characterisation and transferability of twelve microsatellite loci for Hydrophis spiralis, the yellow sea snake (Serpentes: Elapidae) | | Conservation genetic resources |
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| Frequent detection and characterization of hepatitis E virus variants in wild rats (Rattus rattus) in Indonesia | | Archives of virology |
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| Peat swamp forest avifauna of Central Kalimantan, Indonesia: Effects of habitat loss and degradation | | Biological conservation |
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| Coastal dynamic and shoreline mapping: multi-sources spatial data analysis in Semarang Indonesia | | Environmental monitoring and assessment |
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| Heavy metal enrichment in the seagrasses of Lakshadweep group of islands—A multivariate statistical analysis | | Environmental monitoring and assessment |
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| Sequence homogeneity of the ψserA-trmU-tufB-secE-nusG-rplKAJL-rpoB gene cluster and the flanking regions of ‘Candidatus Liberibacter asiaticus’ isolates around Okinawa Main Island in Japan | | Journal of general plant pathology |
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| Live coral trade impacts on the mushroom coral Heliofungia actiniformis in Indonesia: Potential future management approaches | | Biological conservation |
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| Fluxes of dissolved organic carbon and nitrogen in cropland and adjacent forests in a clay-rich Ultisol of Thailand and a sandy Ultisol of Indonesia | | Soil and tillage research |
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| Pond production of Penaeus monodon in relation to stocking density, survival rate and mean weight at harvest in East Java, Indonesia | | Aquaculture research |
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| Alternative egg-feeding tactics in Telmatherina sarasinorum, a trophic specialist of Lake Matano’s evolving sailfin silversides fish radiation | | Hydrobiologia |
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| The livelihood impacts of oil palm: smallholders in Indonesia | | Biodiversity and conservation |
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| Restoration Ecology of Lowland Tropical Peatlands in Southeast Asia: Current Knowledge and Future Research Directions | | Ecosystems |
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| Potential impacts of climate change on the environmental services of humid tropical alpine regions | | Global ecology and biogeography |
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| All politics is local: the case of Macrocephalon maleo conservation on Sulawesi, Indonesia | | Biodiversity and conservation |
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| Eco-floristic sectors and deforestation threats in Sumatra: identifying new conservation area network priorities for ecosystem-based land use planning | | Biodiversity and conservation |
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| Particle release transport in Danshuei River estuarine system and adjacent coastal ocean: a modeling assessment | | Environmental monitoring and assessment |
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| Analysis of sequences from field samples reveals the presence of the recently described pepper vein yellows virus (genus Polerovirus) in six additional countries | | Archives of virology |
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| GIS analysis of conjunctive water resource use in Nganjuk district, east Java, Indonesia | | Paddy and water environment |
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| Microbial Communities in the World's Largest Acidic Volcanic Lake, Kawah Ijen in Indonesia, and in the Banyupahit River Originating from It | | Microbial ecology |
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| Pulp industry and environment in Indonesia: is there sustainable future? | | Regional environmental change |
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| The Determination of Ozone in Ambient Air with Free Hanging Filters as Passive Samplers | | Water, air, and soil pollution |
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| Donor-oyster derived heritability estimates and the effect of genotype×environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima | | Aquaculture |
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| Fading of the last giants: an assessment of habitat availability of the Sunda gharial Tomistoma schlegelii and coverage with protected areas | | Aquatic conservation marine and freshwater ecosystems |
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| The plankton community of Lake Matano: factors regulating plankton composition and relative abundance in an ancient, tropical lake of Indonesia | | Hydrobiologia |
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| Connectivity and the development of population genetic structure in Indo-West Pacific coral reef communities | | Global ecology and biogeography |
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| Evaluating N management strategies for hybrid maize in Southeast Asia | | Field crops research |
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| A remarkable case of fiddler crab, Uca spp., alpha diversity in Wallacea | | Hydrobiologia |
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| Anti-angiogenic activity of Gynura segetum leaf extracts and its fractions | | Journal of ethnopharmacology |
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